No, your garage door remote should not affect anything in the car. Even if there is a sensor in the car that can pick up the frequency of the remote (unlikely), it won't respond to the code your remote transmits. Being an older opener, it probably doesn't use rolling code technology, but certainly anything in your Lincoln would be rolling code.
I'd start with the basics: disconnect the battery when you park your car, then reconnect it in the morning. If the battery isn't dead, you know your problem is in your car and not in your battery. Then I'd just start pulling fuses.
The old method of putting a voltmeter in series with the battery won't work on most newer cars because the idle current draw is so high; there's a lot of electronics that need to be kept alive when the engine is off. But you can still put an ammeter in series with the battery (being careful to shut everything off first) and measure the current draw. If a good battery is going flat overnight, that's a draw of several amps which should be easy enough to detect.
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Today's Featured Article - History of the Nuffield Tractor - by Anthony West. The Nuffield tractor story started in early 1945. The British government still reeling from the effects of the war on the economy, approached the Nuffield organization to see if they would design and build an "ALL NEW" British built wheeled tractor, suitable for both British and world farming.
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